autoplot-qntmap: Create a ggplot object for objects created by qntmap package

In atusy/qntmap: Enhance quantitative analysis of EPMA map

Description

Create a ggplot object for objects created by qntmap package

Usage

## S3 method for class 'qntmap'
autoplot(
  object,
  zname = setdiff(names(object), c("x", "y"))[[1L]],
  zlim = NULL,
  colors = c("magma", "viridis", "gray"),
  unit = c("px", "um", "mm", "cm"),
  ...
)

## S3 method for class 'qm_xmap'
autoplot(
  object,
  zname = setdiff(names(object), c("x", "y"))[[1L]],
  zlim = NULL,
  colors = c("magma", "viridis", "gray"),
  unit = c("px", "um", "mm", "cm"),
  ...
)

## S3 method for class 'qm_cluster'
autoplot(
  object,
  zname = "cluster",
  zlim = NULL,
  colors = c("magma", "viridis", "gray"),
  unit = c("px", "um", "mm", "cm"),
  ...
)

Arguments

object	an object, whose class will determine the behaviour of autoplot
zname	Name of z-axis (fill). If unset, first column except "x" and "y" is chosen for objects with qm_xmap or qntmap classes, and "cluster" is chosen for the qm_cluster class object.
zlim	Range limit of z-coordinates. This is neglected if z is discrete.
colors	One of "magma", "viridis", or "gray". Applicable when z-coordinates is numeric.
unit	Unit of x- and y-axis ("px", "um", "mm" or "cm").
...	other arguments passed to specific methods

atusy/qntmap documentation built on April 11, 2021, 4:45 p.m.