Files in aumath-advancedr2019/simDNA
Simulate and analyze DNA
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
DESCRIPTIONold
NAMESPACE
R/SFS.R
R/SNP.R
R/TajimaD.R
R/mutRate.R
R/pairwDiff.R
R/plot_DNAmat_class.R
R/plot_SFS_class.R
R/print_DNAmat_class.R
R/print_SFS_class.R
R/print_summary_DNAmat.R
R/print_summary_SFS.R
R/simBranch.R
R/simBranchFixed.R
R/simBranchSudExpansion.R
R/simBranchVar.R
R/simDNA.R
R/simDNAseq.R
R/simSeq.R
R/summary_DNAmat_class.R
R/summary_SFS_class.R
README.md
_pkgdown.yml
docs/404.html
docs/articles/analyzeDNA.html
docs/articles/index.html
docs/articles/simulateDNA.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/SFS.html
docs/reference/SNP.html
docs/reference/TajimaD.html
docs/reference/index.html
docs/reference/mutRate.html
docs/reference/pairwDiff.html
docs/reference/plot.DNAmat_class-1.png
docs/reference/plot.DNAmat_class-2.png
docs/reference/plot.DNAmat_class.html
docs/reference/plot.SFS_class-1.png
docs/reference/plot.SFS_class-2.png
docs/reference/plot.SFS_class.html
docs/reference/print.DNAmat_class.html
docs/reference/print.SFS_class.html
docs/reference/print.summary_DNAmat.html
docs/reference/print.summary_SFS.html
docs/reference/simDNA.html
docs/reference/simDNAseq.html
docs/reference/summary.DNAmat_class.html
docs/reference/summary.SFS_class.html
docs/reqspec.html
docs/roadmap.html
man/SFS.Rd
man/SNP.Rd
man/TajimaD.Rd
man/mutRate.Rd
man/pairwDiff.Rd
man/plot.DNAmat_class.Rd
man/plot.SFS_class.Rd
man/print.DNAmat_class.Rd
man/print.SFS_class.Rd
man/print.summary_DNAmat.Rd
man/print.summary_SFS.Rd
man/simDNA.Rd
man/simDNAseq.Rd
man/summary.DNAmat_class.Rd
man/summary.SFS_class.Rd
reqspec.md
reqspec.pdf
roadmap.md
simDNA.Rproj
tests/testthat.R
tests/testthat/test_SFS.R
tests/testthat/test_SNP.R
tests/testthat/test_TajimaD.R
tests/testthat/test_mutRate.R
tests/testthat/test_pairwDiff.R
tests/testthat/test_simDNAseq.R
vignettes/.gitignore
vignettes/Tree.png
vignettes/analyzeDNA.Rmd
vignettes/simulateDNA.Rmd
