summary.SFS_class: Summary statistics
In aumath-advancedr2019/simDNA: Simulate and analyze DNA

Description Usage Arguments Value See Also Examples

Calculates summary statistics useful for analyzing DNA.

1 2	## S3 method for class 'SFS_class' summary(SFS)

SFS

vector with the site frequency spectrum of class 'SFS_class'.

List containing the following components:

`Watterson`	Watterson's estimator.
`pairwDiff`	The pairwise difference estimator.
`TajimaD`	Tajima's D

mutRate, TajimaD

# Using the function SFS:
DNAmat <- matrix(c(0,1,0,0,
                   0,1,0,1,
                   0,0,0,0,
                   0,0,0,0), 4,4, byrow=TRUE)
summary(SFS(DNAmat))

# Creating SFS by hand:
SFS <- c(2,1,0,0,0,1,0,0)
class(SFS) <- "SFS_class"
summary(SFS)