| mutRate | Mutation Rate |
| pairwDiff | Pairwise Difference |
| plot.DNAmat_class | Site frequency spectrum plot |
| plot.SFS_class | Site frequency spectrum plot |
| print.DNAmat_class | Print DNA sequences |
| print.SFS_class | Print site frequency spectrum |
| print.summary_DNAmat | Internal function |
| print.summary_SFS | Internal function |
| SFS | Site Frequency Spectrum |
| simDNA | The simDNA package |
| simDNAseq | Simulate DNA sequences |
| SNP | SNP (Single-Nucleotide Polymorphism) matrix |
| summary.DNAmat_class | Summary statistics |
| summary.SFS_class | Summary statistics |
| TajimaD | Tajima's D |
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