MapCollection-class | R Documentation |
This class holds several MareyMap-class
objects organised in sets (using MapSet-class
object).
Objects can be created by calls of the form new("MapCollection", ...)
or using the function MapCollection. You may as well use the default collection provided by the package (as data()
).
sets
:Object of class "list"
containing a MapSet-class
for each set$* of the collection.
signature(x = "MapCollection")
: ...
signature(x = "MapCollection", i = "ANY", j = "ANY", value = "MapSet")
: ...
signature(x = "MapCollection", i = "ANY", j = "ANY", value = "MareyMap")
: ...
signature(x = "MapCollection")
: obtain the MapSet corresponding to a set name
signature(x = "MapCollection")
: subset by set name
signature(e1 = "MapCollection", e2 = "MareyMap")
: adds a map to the collection
signature(e1 = "MapCollection", e2 = "MapSet")
: adds a set t the collection
signature(e1 = "MapCollection", e2 = "character")
: removes the map named e2 from the object e1.
signature(from = "MapCollection", to = "data.frame")
: --> as(object,"data.frame")
signature(object = "MapCollection")
: returns the list of the names of all the sets present in the collection
signature(object = "MapCollection")
: returns the length of the collection
signature(object = "MapCollection", file = "character")
: Writes the content of the collection to text file text
.
Aurélie Siberchicot aurelie.siberchicot@univ-lyon1.fr and Clément Rezvoy
MapSet-class
MareyMap-class
data(Homo_sapiens_mean)
map1 <- Homo_sapiens_mean[["Chromosome 01"]]
# do some useful changes to the map...
mapName(map1)<- "Chrom 1 (modified)"
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