MapSet-class | R Documentation |
This class is a collection of MareyMap for a given set. Not that useful on its own, it is used for internal organization inside a MapCollection
Objects can be created by calls of the form new("MapSet", ...)
. Or using the function MapSet()
.
maps
:Object of class "list"
containing all the MareyMap
of the set.
setName
:Object of class "character"
containing the name of the set
signature(x = "MapSet")
: returns a map from the list
signature(x = "MapSet", i = "ANY", j = "ANY", value = "MareyMap")
: replaces a map in the list with a new one
signature(x = "MapSet")
: returns a map from the list.
signature(x = "MapSet")
: access a map by name in the list.
signature(e1 = "MapSet", e2 = "MareyMap")
: adds a map to the collection.
signature(e1 = "MapSet", e2 = "character")
: removes the map named e2 from the object e1.
signature(from = "MapSet", to = "data.frame")
: converts the specieMaps object into a data.frame.
signature(object = "MapSet")
: returns a vector containing the names of all the maps.
signature(object = "MapSet", value = "character")
: changes the name of the set. Also changes the named of all MareyMap objects inside the list.
signature(object = "MapSet")
: returns the name of the set.
signature(object = "MapCollection")
: returns the length of the set
signature(object = "MapSet", file = "character")
: Writes the content of the MapSet object to file.
Aurélie Siberchicot aurelie.siberchicot@univ-lyon1.fr and Clément Rezvoy
MapCollection-class
MareyMap-class
data(Homo_sapiens_mean)
set <- Homo_sapiens_mean
setName(set) <- "Human"
set[["Chromosome 01"]]
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