SrIT.Convert: SrIT.Convert function

In austinjcase/GenePos:

Description

This function converts stem rust 0-4 infection types to a numeric scale SrIT.Convert(x, thresh) Function SrIT.Convert(x, thresh) converts raw stem rust IT values first to weighted average data is then converted to H and L values based on the value of thresh data must conform to the two IT value system as described by Bowden can be used for both stem rust and leaf rust using the 0-4 stakman scale output is a matrix with race names set as row names

Usage

SrIT.Convert(x, thresh)

Arguments

x	REQUIRED x is the name of thex is a matrix containing the raw IT values to convert to H or L calls, must be read in as a matrix as given by the example files must be a matrix with the race name set as the row names output is a matrix with race names set as row names
thresh	REQUIRED thresh is the threshold IT for calling an line as high or low lines > or equal to thresh will be called high thresh can be set to one of the following to any of the Bowden IT double values ie "44" "3-2" ";;" "0;0;"

austinjcase/GenePos documentation built on May 25, 2019, 3:20 p.m.