Man pages for avastermark19/doseR
doseR
| cD.DM | cD.DM Function to convert count dat object to LME4 input. |
| countDat-class | An S4 class that stores count data. |
| dafs | dafs |
| dafsFilter | dafsFilter Function to filter expression data within a... |
| extract-methods | subsetting method for countDat class |
| generateStats | generateStats Statistics function to summarize expression... |
| getLibsizes-methods | getLibsizes method for count Dat class, derived from... |
| glSeq | glSeq LME4 wrapper. |
| iqrxFilter | iqrxFilter Function to filter expression data within a... |
| libsizes-methods | libsizes method for testClass |
| make_RPKM | make_RPKM Make RPKM. |
| ncol-methods | replicates method for testClass |
| nrow-methods | replicates method for testClass |
| plotExpr | plotExpr Function to generate a boxplot (expression) for a... |
| plotMA.CD | plotMA.CD Function to make MA plot. |
| plotRatioBoxes | plotRatioBoxes Function to boxplot density of ratios between... |
| plotRatioDensity | plotRatioDensity Function to plot density of ratios between... |
| quantFilter | quantFilter Function to filter expression data of a countDat... |
| replicates-methods | replicates method for testClass |
| simpleFilter | simpleFilter Function to filter expression data of a countDat... |
| test_diffs | test_diffs Statistics function to summarize expression data... |
