simpleFilter: simpleFilter Function to filter expression data of a countDat...
In avastermark19/doseR: doseR
Description
Usage
Arguments
Details
Value
Author(s)
References
Description
simpleFilter is a filtering function used to remove rows (genes) of various expression data.
Usage
1
simpleFilter(cD, mean_cutoff=NULL, min_cutoff=NULL, median_cutoff=NULL, counts=TRUE)
Arguments
cD
A countDat object.
mean_cutoff
The lower cutoff, using mean.
min_cutoff
The cutoff, expressed as a minimum acceptable value.
median_cutoff
The cutoff, using a median value.
counts
Boolean, use raw counts data (default) or RPKM.
Details
This function filters the expression of the supplied countDat object, based on a selected cutoff.
Value
Returns a filtered countDat object.
Author(s)
AJ Vaestermark, JR Walters.
References
The "doseR" package, 2018 (in press).
avastermark19/doseR documentation built on May 14, 2019, 4:08 a.m.
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Description Usage Arguments Details Value Author(s) References
Description
simpleFilter is a filtering function used to remove rows (genes) of various expression data.
Usage
1 | simpleFilter(cD, mean_cutoff=NULL, min_cutoff=NULL, median_cutoff=NULL, counts=TRUE)
|
Arguments
cD |
A countDat object. |
mean_cutoff |
The lower cutoff, using mean. |
min_cutoff |
The cutoff, expressed as a minimum acceptable value. |
median_cutoff |
The cutoff, using a median value. |
counts |
Boolean, use raw counts data (default) or RPKM. |
Details
This function filters the expression of the supplied countDat object, based on a selected cutoff.
Value
Returns a filtered countDat object.
Author(s)
AJ Vaestermark, JR Walters.
References
The "doseR" package, 2018 (in press).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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