quantFilter: quantFilter Function to filter expression data of a countDat...

In avastermark19/doseR: doseR

Description

This function filters the expression of the supplied countDat object; quantFilter is a filtering function used to remove rows (genes) of various expression data.

Usage

quantFilter (cD, lo.bound=.25, hi.bound=.75, MEDIAN = FALSE, na.rm = TRUE)

Arguments

cD	A countDat object.
lo.bound	The lower cutoff, expressed as a percentage.
hi.bound	The upper cutoff, expressed as a percentage.
MEDIAN	Boolean, Calculate RowMeans or RowMedians.
na.rm	Boolean, NA removal.

Details

This function filters the expression of the supplied countDat object, based on a selected percentage cutoff.

Value

Returns a filtered countDat object.

Author(s)

AJ Vaestermark, JR Walters.

References

The "doseR" package, 2018 (in press).

avastermark19/doseR documentation built on May 14, 2019, 4:08 a.m.