generateStats: generateStats Statistics function to summarize expression...
In avastermark19/doseR_0.99.15: doseR
Description
Usage
Arguments
Details
Value
Author(s)
References
Examples
Description
generateStats is a summary function used on various
expression data.
Usage
1
generateStats(se, groupings= NULL, mode_mean=TRUE, LOG2=TRUE)
Arguments
se
A SummarizedExperiment object.
groupings
A grouping (annotation column), e.g. groupings="something".
mode_mean
Boolean, Calculate RowMeans or RowMedians.
LOG2
Boolean, Calculate LOG2.
Details
This function completes summary statistics of the expression
of the supplied s.e. object.
Value
Returns an invisible list of summary statistics, kruskal test
and raw data of an s.e. object.
Author(s)
AJ Vaestermark, JR Walters.
References
The "doseR" package, 2018 (in press).
Examples
1
2
data(hmel.se)
generateStats(se, groupings="annotation.ZA")
avastermark19/doseR_0.99.15 documentation built on May 23, 2019, 3:04 a.m.
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Description Usage Arguments Details Value Author(s) References Examples
Description
generateStats is a summary function used on various expression data.
Usage
1 | generateStats(se, groupings= NULL, mode_mean=TRUE, LOG2=TRUE)
|
Arguments
se |
A SummarizedExperiment object. |
groupings |
A grouping (annotation column), e.g. groupings="something". |
mode_mean |
Boolean, Calculate RowMeans or RowMedians. |
LOG2 |
Boolean, Calculate LOG2. |
Details
This function completes summary statistics of the expression of the supplied s.e. object.
Value
Returns an invisible list of summary statistics, kruskal test and raw data of an s.e. object.
Author(s)
AJ Vaestermark, JR Walters.
References
The "doseR" package, 2018 (in press).
Examples
1 2 | data(hmel.se)
generateStats(se, groupings="annotation.ZA")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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