generateStats: generateStats Statistics function to summarize expression...

Description Usage Arguments Details Value Author(s) References Examples

Description

generateStats is a summary function used on various expression data.

Usage

1
generateStats(se, groupings= NULL, mode_mean=TRUE, LOG2=TRUE)

Arguments

se

A SummarizedExperiment object.

groupings

A grouping (annotation column), e.g. groupings="something".

mode_mean

Boolean, Calculate RowMeans or RowMedians.

LOG2

Boolean, Calculate LOG2.

Details

This function completes summary statistics of the expression of the supplied s.e. object.

Value

Returns an invisible list of summary statistics, kruskal test and raw data of an s.e. object.

Author(s)

AJ Vaestermark, JR Walters.

References

The "doseR" package, 2018 (in press).

Examples

1
2
data(hmel.se)
generateStats(se, groupings="annotation.ZA")

avastermark19/doseR_0.99.15 documentation built on May 23, 2019, 3:04 a.m.