glSeq: glSeq LME4 wrapper.

Description Usage Arguments Details Value Author(s) References Examples

Description

This function is an LME4 wrapper for dosage analysis.

Usage

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glSeq(dm, model, ...)

Arguments

dm

The dm data. Generally a reformatted object from se.DM.

model

The model. Expressed using standard LME4 syntax, see vignette.

...

passthrough arguments.

Details

This function is an lme4 wrapper.

Value

Returns LME4 output.

Author(s)

AJ Vaestermark, JR Walters.

References

The "doseR" package, 2018 (in press).

Examples

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data(hmel.se)
f_se <- quantFilter(se, lo.bound = 0.4, hi.bound = 0.5)
dm <- se.DM(f_se)
glSeq(dm, "-1 + replicate")

avastermark19/doseR_0.99.15 documentation built on May 23, 2019, 3:04 a.m.