simpleFilter: simpleFilter Function to filter expression data of an object.
In avastermark19/doseR_0.99.15: doseR
Description
Usage
Arguments
Details
Value
Author(s)
References
Examples
Description
simpleFilter is a filtering function used to remove rows
(genes) of various expression data.
Usage
1
2
Arguments
se
A SummarizedExperiment object.
mean_cutoff
The lower cutoff, using mean.
min_cutoff
The cutoff, expressed as a minimum acceptable value.
median_cutoff
The cutoff, using a median value.
counts
Boolean, use raw counts data (default) or RPKM.
Details
This function filters the expression of the supplied obj.
Value
Returns a filtered SummarizedExperiment object.
Author(s)
AJ Vaestermark, JR Walters.
References
The "doseR" package, 2018 (in press).
Examples
1
data(hmel.se) ; f_se <- simpleFilter(se, mean_cutoff=0.5)
avastermark19/doseR_0.99.15 documentation built on May 23, 2019, 3:04 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) References Examples
Description
simpleFilter is a filtering function used to remove rows (genes) of various expression data.
Usage
1 2 |
Arguments
se |
A SummarizedExperiment object. |
mean_cutoff |
The lower cutoff, using mean. |
min_cutoff |
The cutoff, expressed as a minimum acceptable value. |
median_cutoff |
The cutoff, using a median value. |
counts |
Boolean, use raw counts data (default) or RPKM. |
Details
This function filters the expression of the supplied obj.
Value
Returns a filtered SummarizedExperiment object.
Author(s)
AJ Vaestermark, JR Walters.
References
The "doseR" package, 2018 (in press).
Examples
1 | data(hmel.se) ; f_se <- simpleFilter(se, mean_cutoff=0.5)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.