make_RPKM: make_RPKM Make RPKM.
In avastermark19/doseR_0.99.4: doseR

Description Usage Arguments Value Author(s) References Examples

make_RPKM populates RPKM slot of modified countData (countDat) S4 object.

1	make_RPKM(cd_object)

cd_object

A countDat object.

RPKM populated object

AJ Vaestermark, JR Walters.

The "doseR" package, 2018 (in press).

data(hmel.data.doser)
reps <- c("Male", "Male", "Male", "Female", "Female", "Female")
annotxn <- data.frame("Chromosome" = factor(hmel.dat$chromosome,
levels = 1:21))
hmtr <- hmel.dat$trxLength
hm<-new("countDat",data=hmel.dat$readcounts,replicates=reps,seglens=hmtr,
annotation=annotxn)
libsizes(hm) <- getLibsizes2(hm, estimationType = "total")
rpkm(hm) <- make_RPKM(hm)