Man pages for averissimo/brca.data
BRCA gene expression and clinical data from TCGA (with import script)
| brca.data | brca.data: Breast Cancer data from TCGA |
| clinical | Clinical data per tissue type |
| fpkm.per.tissue | Gene expression levels per tissue type. |
| fpkm.per.tissue.barcode | Patient's barcode per tissue type |
| gdc | Original data from GDC |
| gene.ranges | Genomic ranges with description for genes in tissue matrices |
| getParticipantCode | Get Participant part of TCGA Barcode |
| getSampleTypeCode | Get Sample Type part of TCGA Barcode |
| joinRNASeqData | Joins all expression data in a single matrix |
| loadGDCRnaSeq | Get rnaseq assay data to GDC object |
| mutation | List with mutation data |
