getSampleTypeCode: Get Sample Type part of TCGA Barcode
In averissimo/brca.data: BRCA gene expression and clinical data from TCGA (with import script)
Description
Usage
Arguments
Details
Value
Examples
Description
XX - where 01 is solid tumor, 06 is metasteses, etc..
Usage
1
getSampleTypeCode(fullBarcode)
Arguments
fullBarcode
number, or vector of numbers
Details
See [Code Tables Report](https://gdc.cancer.gov/resources-tcga-users/tcga-code-tables/sample-type-codes) for a complete list of sample codes.
Value
sample code
Examples
1
2
getParticipantCode('TCGA-3C-AAAU-01A-11R-A41B-07')
getParticipantCode(c('TCGA-3C-AAAU-01A-11R-A41B-07', 'TCGA-3C-AALI-01A-11R-A41B-07'))
averissimo/brca.data documentation built on May 20, 2019, 11:13 a.m.
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Description Usage Arguments Details Value Examples
Description
XX - where 01 is solid tumor, 06 is metasteses, etc..
Usage
1 | getSampleTypeCode(fullBarcode)
|
Arguments
fullBarcode |
number, or vector of numbers |
Details
See [Code Tables Report](https://gdc.cancer.gov/resources-tcga-users/tcga-code-tables/sample-type-codes) for a complete list of sample codes.
Value
sample code
Examples
1 2 | getParticipantCode('TCGA-3C-AAAU-01A-11R-A41B-07')
getParticipantCode(c('TCGA-3C-AAAU-01A-11R-A41B-07', 'TCGA-3C-AALI-01A-11R-A41B-07'))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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