runs limma's lmFit, contrast.fit, and eBayes in succession
1 2 | fitting(my_eset = exprs, design = my_design,
path2contrast_file = "contrast.txt")
|
design |
this is a design object created with teh get_design() function its default value is design |
path2contrast_file |
the default is contrast.txt which is a table that contains the contrasts. It should have a column named Formula in which the contrast based on groups are given and anoter column named Contrast which gives a title for each contrast. |
exprs |
a ExpressionSet default value is exprs |
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