create a contrast.matrix to be used with limma's fit function
1 2 | get_contrast.matrix(path2contrast_file = "contrasts.txt",
my_design = design, lmFit_out = fit)
|
path2contrast_file |
the default is contrast.txt which is a table that contains the contrasts. It should have a column named Formula in which the contrast based on groups are given and anoter column named Contrast which gives a title for each contrast. |
lmFit_out |
output of lmFit function |
design |
this is a design object created with teh get_design() function its default value is design |
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