get_contrast.matrix: create a contrast.matrix to be used with limma's fit function

Description Usage Arguments

Description

create a contrast.matrix to be used with limma's fit function

Usage

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get_contrast.matrix(path2contrast_file = "contrasts.txt",
  my_design = design, lmFit_out = fit)

Arguments

path2contrast_file

the default is contrast.txt which is a table that contains the contrasts. It should have a column named Formula in which the contrast based on groups are given and anoter column named Contrast which gives a title for each contrast.

lmFit_out

output of lmFit function

design

this is a design object created with teh get_design() function its default value is design


axelmuller/geometric2 documentation built on May 25, 2019, 6:26 p.m.