Files in b-klaus/DChIPRep
DChIPRep - Analysis of chromatin modification ChIP-Seq data with replication
DESCRIPTION
LICENCE
NAMESPACE
NEWS
R/AllClasses.R
R/AllGenerics.R
R/DChipRep.R
R/dataImport.R
R/dataImportsoGGi.R
R/documentData.R
R/methods.R
R/plottingFunctions.R
R/runTesting.R
data/TSS_galonska.rda
data/chip_galonska.rda
data/exampleChipData.rda
data/exampleInputData.rda
data/exampleSampleTable.rda
data/input_galonska.rda
data/sample_table_galonska.rda
data/testData.rda
exec/DChIPRep.py
inst/CITATION
inst/REFERENCES.bib
inst/extdata/BY_conf_K4me3_1__ORF_count.txt
inst/extdata/BY_conf_K4me3_2__ORF_count.txt
inst/extdata/BY_conf_K4me3_3__ORF_count.txt
inst/extdata/BY_conf_WCE_1__ORF_count.txt
inst/extdata/BY_conf_WCE_2__ORF_count.txt
inst/extdata/BY_conf_WCE_3__ORF_count.txt
inst/extdata/SET2_conf_K4me3_1__ORF_count.txt
inst/extdata/SET2_conf_K4me3_2__ORF_count.txt
inst/extdata/SET2_conf_K4me3_3__ORF_count.txt
inst/extdata/SET2_conf_WCE_1__ORF_count.txt
inst/extdata/SET2_conf_WCE_2__ORF_count.txt
inst/extdata/SET2_conf_WCE_3__ORF_count.txt
inst/extdata/subsampled_0001_pc_SRR2144628_WCE_bowtie2_mapped-only_XS-filt_no-dups.bam
inst/extdata/subsampled_0001_pc_SRR2144628_WCE_bowtie2_mapped-only_XS-filt_no-dups.bam.bai
man/DChIPRep.Rd
man/DChIPRepResults.Rd
man/DESeq2Data.Rd
man/FDRresults.Rd
man/TSS_galonska.Rd
man/chip_galonska.Rd
man/exampleChipData.Rd
man/exampleInputData.Rd
man/exampleSampleTable.Rd
man/getMATfromDataFrame.Rd
man/importData.Rd
man/importDataFromMatrices.Rd
man/importData_soGGi.Rd
man/input_galonska.Rd
man/plotProfiles.Rd
man/plotSignificance.Rd
man/resultsDChIPRep.Rd
man/robust_mean.Rd
man/runTesting.Rd
man/sample_table_galonska.Rd
man/show.Rd
man/summarizeCountsPerPosition.Rd
man/testData.Rd
tests/testthat.R
tests/testthat/test_Testing.R
tests/testthat/test_dataImport.R
tests/testthat/test_dataImport_soGGi.R
tests/testthat/test_dataInput.R
tests/testthat/test_plottingFunctions.R
tests/testthat/test_testConstructor.R
vignettes/DChIPRepVignette.Rmd
vignettes/references.bib
