Description Usage Arguments Value Examples
This function takes a data.frame, with the genomic features (e.g. transcripts or genes) in the rows and the positions upstream and downstream of the TSS in the columns as well as a column ID containing a genomic feature ID and returns the data.frame with the ID column removed. The input for this function are tables obtained after running the Python import script.
1 | getMATfromDataFrame(df, ID = "name")
|
df |
the input data frame with positions in the columns and the genomic features in the rows. |
ID |
the name of the ID column to be removed. |
a matrix with the ID column removed
1 2 3 4 5 | data(exampleSampleTable)
directory <- file.path(system.file("extdata", package="DChIPRep"))
df <- lapply(file.path(directory, exampleSampleTable$Input),
read.delim)[[1]]
mat <- getMATfromDataFrame(df)
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