Description Usage Arguments Value See Also Examples
This function runs the testing on a DChIPRepResults
object. It adds
the FDR calculations and the result table to the DChIPRepResults
object.
1 2 3 | ## S4 method for signature 'DChIPRepResults'
runTesting(object, lfcThreshold = 0.05,
plotFDR = FALSE, ...)
|
object |
A DChIPRepResults object. |
lfcThreshold |
A non-negative threshold value, which determines the null
hypothesis. The null hypothesis is
H_0: |log2(FC)| > |
plotFDR |
If set to TRUE a plot showing the estimated FDRs will be displayed |
... |
not used currently |
a modified DChIPRepResults object containing the testing results
1 2 3 | data(testData)
dcr <- DChIPRepResults(testData)
dcr <- runTesting(dcr)
|
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