U.hypergeom: An internal S4 class for the user data of the hypergeometric...

In b2slab/FELLA: Interpretation and enrichment for metabolomics data

Description

An internal S4 class for the user data of the hypergeometric over representation analysis

Slots

valid

Logical value; is the analysis valid?

pvalues

Named numeric vector with p-values

pathhits

Numeric named vector with the quantities "sample_success" for the hypergeometric distribution (#affected in path)

pathbackground

Numeric named vector with the quantities "total_success" for the hypergeometric distribution (total in path)

nbackground

Numeric value, number of compoudns in the background. Equivalently, number of rows for the hypergeometric binary matrix

ninput

Numeric value, number of affected compounds matched to the rownames

b2slab/FELLA documentation built on March 3, 2021, 2:22 p.m.