getExcluded: Get excluded compounds

In b2slab/FELLA: Interpretation and enrichment for metabolomics data

Description

Extractor function for the compounds in the input that were not mapped to the KEGG graph

Usage

getExcluded(object)

Arguments

object

FELLA.USER object

Value

Vector of the excluded compounds

Examples

data(FELLA.sample)
data(input.sample)

## No excluded compounds
obj <- defineCompounds(
compounds = input.sample, 
data = FELLA.sample)
getExcluded(obj)

## One compound does not map
## The user gets a warning as well
obj <- defineCompounds(
compounds = c(input.sample, "intruder"), 
data = FELLA.sample)
getExcluded(obj)

b2slab/FELLA documentation built on March 3, 2021, 2:22 p.m.