Global functions | |
---|---|
adjustDataset | Man page |
annotationDBMeta | Man page |
areCacheFoldersValid | Source code |
calcPCA | Man page Source code |
calculatedAnnotation | Man page |
checkBinValidity | Source code |
checkGPLsFallback | Man page |
checkGSEType | Man page |
colMeansByGroups | Man page Source code |
collapseDataset | Man page |
confFile | Source code |
configureAnnotDB | Source code |
configureFGSEA | Source code |
configureGEOcache | Source code |
configureRnaseqCounts | Source code |
convertByAnnotationDB | Man page |
createDockerConf | Man page |
createES | Man page Source code |
deseqAnalysisAdvancedImpl | Source code |
deseqAnalysisSimpleImpl | Source code |
es | Man page |
fgseaExample | Man page |
generatePreloadedSession | Man page |
generateReleaseJS | Source code |
getArchs4Files | Man page Source code |
getBriefData | Source code |
getCountsMetaPart | Man page Source code |
getDesignMatrix | Source code |
getES | Man page |
getFileIndexDF | Source code |
getGDS | Man page Source code |
getGEODir | Source code |
getGSE | Man page |
getIndicesVector | Source code |
getPhantasusConf | Man page Source code |
getSetupConf | Source code |
gseaPlot | Man page Source code |
isCountsMetaOld | Source code |
isCountsPriorityValid | Source code |
isHSDS | Man page Source code |
isValidExperimentID | Source code |
limmaAnalysis | Man page |
limmaAnalysisAdvancedImpl | Source code |
limmaAnalysisSimpleImpl | Source code |
loadCounts | Man page Source code |
loadFromARCHS4 | Man page Source code |
loadGEO | Man page Source code |
loadPreloaded | Man page Source code |
makeAnnotated | Source code |
parseBriefData | Source code |
performKmeans | Man page Source code |
phantasusVersion | Source code |
queryAnnotationDBMeta | Man page |
rasterizeHeatmap | Source code |
read.gct | Man page Source code |
read.tsv | Source code |
reparseCachedESs | Man page |
reproduceInR | Man page |
rw_dir_check | Source code |
safeDownload | Source code |
selfCheck | Source code |
servePhantasus | Man page Source code |
sessionExists | Source code |
setupPhantasus | Man page Source code |
shinyGAMAnalysis | Man page Source code |
stopPhantasus | Source code |
subsetES | Man page Source code |
take | Source code |
tmmNormalization | Source code |
updateARCHS4 | Man page |
updateARCHS4meta | Man page Source code |
updateCountsMeta | Man page Source code |
updateDEE2meta | Man page Source code |
validateCountsCollection | Man page Source code |
voomNormalization | Source code |
write.gct | Man page Source code |
writeToList | Source code |
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