updateARCHS4: Update archs4 files.
In baba-beda/morpheusR: Visual and interactive gene expression analysis
updateARCHS4 R Documentation
Update archs4 files.
Description
Download archs4 or archs4zoo counts in cacheDir. If directory does not exists function makes nothing and produce corresponding warnings.
Usage
updateARCHS4(
cacheDir = file.path(getPhantasusConf("cache_folders")$rnaseq_counts, "archs4"),
organism = c("all"),
force = FALSE
)
Arguments
cacheDir
file path to archs4 cache directory
organism
vector which determines organisms to download: human, mouse, zoo or all as default.
Also can be a genus. Possible genus:
drosophila
gallus
bos
caenorhabditis
danio
rattus
saccharomyces
arabidopsis
force
logical value which let function replace current files
baba-beda/morpheusR documentation built on April 23, 2024, 6:56 a.m.
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| updateARCHS4 | R Documentation |
Update archs4 files.
Description
Download archs4 or archs4zoo counts in cacheDir. If directory does not exists function makes nothing and produce corresponding warnings.
Usage
updateARCHS4(
cacheDir = file.path(getPhantasusConf("cache_folders")$rnaseq_counts, "archs4"),
organism = c("all"),
force = FALSE
)
Arguments
cacheDir |
file path to archs4 cache directory |
organism |
vector which determines organisms to download: human, mouse, zoo or all as default. Also can be a genus. Possible genus:
|
force |
logical value which let function replace current files |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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