convertByAnnotationDB: Map indexes using Annotation DB

convertByAnnotationDBR Documentation

Map indexes using Annotation DB

Description

convertByAnnotationDB function returns keyType ids from dbName mapped to columnName in es.

Usage

convertByAnnotationDB(
  es,
  dbName,
  columnName,
  columnType,
  keyType,
  otherOptions
)

Arguments

es

source ExpressionSet

dbName

name of AnnotationDB file

columnName

name of column in featureData of source ExpressionSet

columnType

Type of indexes in columnName

keyType

Type of mapped indexes

otherOptions

additional parameters for conversion. Currently only named boolean deleteDotVersion is not ignored.

Value

JSON object with a vector of converted IDs


baba-beda/morpheusR documentation built on Oct. 10, 2024, 1:35 a.m.