Man pages for bahlolab/XIBD
Identity-by-Descent Analysis of the Human Genome
| calculateAlleleFreq | XIBD Calculate Population Allele Frequencies |
| example_genotypes | Filtered Genotypes For The Simulated Data |
| example_hapmap_topbot | Example Topbot Data |
| example_ibd | IBD Segments For The Simulated Data |
| example_parameters | IBD Parameter Estimates For Simulated Data |
| example_pedmap | Simulated IBD Data for Example |
| example_reference_ld | Reference Linkage Disequilibrium Data for Example |
| example_reference_pedmap | Subset of Reference Data for Example |
| getColourPaletteMajor | Internal Function |
| getColourPaletteMinor | Generate a specified number of shades of a given colour. |
| getConditionSNP | Internal Function |
| getGenotypes | XIBD Pre-Analysis Data Processing |
| getHaplotypeFreq | Calculates haplotype frequencies between two SNPs using cpp... |
| getIBDparameters | XIBD Parameter Estimation |
| getIBDsegments | XIBDs IBD Segment Detection |
| getIdentityCoef | Identity Coefficients |
| getLocusMatrix | XIBD Binary IBD Matrix |
| getLocusProportion | XIBD Proportion of Pairs IBD |
| plotIBDproportions | XIBD Locus Proportion Plot |
| plotIBDsegments | XIBD Plot IBD Segments |
| switchBOTgenotypes | XIBD BOT Genotype Switching |
