example_reference_ld: Reference Linkage Disequilibrium Data for Example
In bahlolab/XIBD: Identity-by-Descent Analysis of the Human Genome
Description
A subset of the HapMap TSI linkage disequilibrium (LD) data for SNPs
in the example_pedmap.rda file.
Usage
1
Format
Data frame with columns
- CHR_A
Chromosomes of SNP A.
- BP_A
Base-pair positions of SNP A.
- SNP_A
SNP identifiers of SNP A.
- CHR_B
Chromosomes of SNP B.
- BP_B
Base-pair positions of SNP B.
- SNP_B
SNP identifiers of SNP B.
- R2
Squared correlation between SNPs A and B.
See getGenotypes for details.
bahlolab/XIBD documentation built on May 11, 2019, 5:24 p.m.
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Description
A subset of the HapMap TSI linkage disequilibrium (LD) data for SNPs
in the example_pedmap.rda file.
Usage
1 |
Format
Data frame with columns
- CHR_A
Chromosomes of SNP A.
- BP_A
Base-pair positions of SNP A.
- SNP_A
SNP identifiers of SNP A.
- CHR_B
Chromosomes of SNP B.
- BP_B
Base-pair positions of SNP B.
- SNP_B
SNP identifiers of SNP B.
- R2
Squared correlation between SNPs A and B.
See getGenotypes for details.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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