gambian_isolates: Plasmodium falciparum SNV data from Gambia.

Description Format Source

Description

Variant calls of polymorphic variants from 65 P.falciparum isolates in The Gambia, from Amambua-Ngwa A, Tetteh KK et al., 2012 http://www.ncbi.nlm.nih.gov/pubmed/23133397. The data was extracted from VCF files and converted to GDS format from Malaria Genomics Consortium Pf3k version 4. See the README file at ftp://ngs.sanger.ac.uk/production/pf3k/release_4/ for details. The GDS object was obtained by filtering the MalariaGen VCF files and keeping only biallelic SNPs that were polymorphic in The Gambia and passed all filters.

Format

A SeqVarGDSClass object.

Source

ftp://ngs.sanger.ac.uk/production/pf3k/release_4/


bahlolab/moimix documentation built on April 16, 2020, 8:40 a.m.