getMAF: Compute minor allele frequency
In bahlolab/moimix: Estimating mulitplicity of infection from high-throughput sequencing data
Description
Usage
Arguments
Details
Note
View source: R/seqarray_process_popgen.R
Description
Compute minor allele frequency
Usage
1
getMAF(gdsfile)
Arguments
gdsfile
a SeqVarGDSClass object
Details
Coverage based estimation of minor allele frequences.
The MAF is computed by computing the minimum of the proportion of
reads covering the reference and alternate allele over all samples.
Note
Currently only supports gds files obtained from GATK callers
bahlolab/moimix documentation built on April 16, 2020, 8:40 a.m.
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Description Usage Arguments Details Note
View source: R/seqarray_process_popgen.R
Description
Compute minor allele frequency
Usage
1 | getMAF(gdsfile)
|
Arguments
gdsfile |
a |
Details
Coverage based estimation of minor allele frequences. The MAF is computed by computing the minimum of the proportion of reads covering the reference and alternate allele over all samples.
Note
Currently only supports gds files obtained from GATK callers
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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