plot.bafMatrix: Plot bafMatrix object

In bahlolab/moimix: Estimating mulitplicity of infection from high-throughput sequencing data

Description

Plot bafMatrix object

Usage

## S3 method for class 'bafMatrix'
plot(
  x,
  sample.id,
  assignments = NULL,
  y = NULL,
  xlab = "",
  ylab = "SNV frequency",
  ylim = c(0, 1),
  pch = 16,
  ...
)

Arguments

x	a bafMatrix object
sample.id	character name of sample to plot
assignments	integer vector of cluster memberships (NULL)
y	unnused argument for plot.bafMatrix
xlab	Axis label along chromosome regions
ylab	Axis label for SNV frequency
ylim	Limits for y axis default is between 0 and 1
pch	Plot symbol default is 16
...	other parameters to pass to plot

Details

Plots the genome-wide signal of MOI within an isolate from B-allele frequencies.

bahlolab/moimix documentation built on April 16, 2020, 8:40 a.m.