Man pages for barefootbiology/heyexr
Import, Transform and Visualize Optical Coherence Tomography Volumes in R
| add_undefined | Add a column specifying if the values in the segmentation are... |
| anonymize_dates | Anonymize dates in a volume object. |
| anonymize_identity | Anonymize identity in a volume object. |
| anonymize_image_id | Anonymize the image ID in a volume object. |
| anonymize_volume | Anonymize volume objects. |
| construct_bscan | Construct a ggplot2 object containing the data for a given... |
| construct_slo | Construct a ggplot2 object containing the data for an SLO |
| datetime_to_raw | datetime_to_raw |
| delist_singletons | Remove singleton lists of a list. |
| downsample_mapping | Downsample a sequence of numbers. |
| downsample_vol | Downsample B-scans in a volume object. |
| filter_segmentation_xml | Filter surfaces from an XML segmentation file |
| flip_region | Flip grid region for a table of thickness values |
| get_bscan | Parse the b-scan data from an OCT list object |
| get_central_segmentation | Get the segmentation data from the central scan |
| get_segmentation | Get the segmentation data from an OCT object |
| get_slo | Get the SLO data from an OCT object |
| grid_regions | Corresponding grid regions for right (OD) and left (OS) eyes. |
| heyexr | heyexr: Import Heidelberg Spectralis OCT VOL Files |
| import_thickness_csv | Import the CSV produced by "Thickness Analysis" in OCT... |
| layer_info | Metadata on retinal layers identified by the Iowa Reference... |
| list_to_onerow | Convert a list to a single-row tibble. |
| max_float | Value used to indicate missing data (NA). |
| pad_raw | 'pad_raw' adds null bytes to the end of a raw vector to give... |
| promote_elements | Convert a list to a wide tibble. |
| raw_to_datetime | raw_to_datetime |
| read_bscan_header | Read b-scan header information from a connection to a VOL... |
| read_center_xml | Read "grid center" XML file generated by the Iowa Reference... |
| read_float | Read a float from a binary connection |
| read_float_vector | Read an vector of floats from a binary connection |
| read_nifti | Read OCTExplorer-ready NIFTI file |
| read_oct_files | Read files related to one OCT image |
| read_segmentation_xml | Read layer segmentation output from Iowa Reference... |
| read_ssoct_files | Read OCT volume, angiography, segmentation, and grid center. |
| read_vol | Read a Heidelberg Spectralis VOL file |
| read_vol_header | Read the VOL header |
| read_vol_slo | Read the VOL SLO image |
| spline_correction | Correct contrast |
| strsplit_nth | Split a string and retain the nth value |
| theme_nude | Render a ggplot2 plot with only the data. |
| vol_fit_spline | A spline fit to the PNG exported from Heidelberg Explorer. |
| write_bscan_header | Write b-scan header information to a file connection |
| write_vol | Write the data in a volume object to a VOL file. |
| write_vol_header | Write a VOL header to a file connection. |
| write_vol_slo | Write the VOL SLO image |
