construct_bscan: Construct a ggplot2 object containing the data for a given...

In barefootbiology/heyexr: Import, Transform and Visualize Optical Coherence Tomography Volumes in R

Construct a ggplot2 object containing the data for a given b-scan.

Description

construct_bscan builds a ggplot2 object containing the data for a given b-scan.

Usage

construct_bscan(
  oct,
  bscan_id,
  layer_y_max = oct$header$size_z,
  layer_y_min = 0,
  low_color = "black",
  high_color = "white",
  contrast_correction = spline_correction,
  na_intensity = 0,
  scale_bars = TRUE,
  scale_length = 200,
  scale_color = "white",
  inset_percentage = c(x = 0.025, y = 0.05)
)

Arguments

oct	A list containing the OCT data.
bscan_id	The number of the b-scan of interest.
layer_y_max	Vertical maximum constraint on the b-scan axix.
layer_y_min	Vertical minimum constraint on the b-scan axis.
low_color	Color for lowest values.
high_color	Color for highest values.
scale_bars	Boolean indicating if scale bars be drawn.
scale_length	Length of scale bars in microns.
scale_color	Color of scale bar.
inset_percentage	Percentage of image to inset the scale bar.

Value

A ggplot2 object.

barefootbiology/heyexr documentation built on July 9, 2022, 3:35 a.m.