API for baumbachlab/keypathwayminer-R
KeyPathwayMiner R-Package
| Global functions | |
|---|---|
| .onLoad | Source code |
| Configuration-class | Man page |
| Pathway-class | Man page |
| Result-class | Man page |
| ResultRemote-class | Man page |
| base64EncFile | Man page Source code |
| call_kpm_local | Man page Source code |
| call_kpm_remote | Man page Source code |
| check_files | Man page Source code |
| check_parameters | Man page Source code |
| combine_mutliple_matrices | Man page Source code |
| compute_z_scores | Man page Source code |
| create_indicator_from_fcurdleTest | Man page |
| create_sca.Seurat | Man page |
| create_sca.SingleCellExperiment | Man page |
| create_union_network | Man page Source code |
| dataset_list | Man page Source code |
| determine_union_groups | Man page Source code |
| do_diff_testing_via_MAST | Man page Source code |
| export_graph | Man page |
| export_graph,Pathway-method | Man page |
| export_matrix | Man page Source code |
| export_nodes | Man page |
| export_nodes,Pathway-method | Man page |
| export_to_iGraph | Man page |
| export_to_iGraph,Pathway-method | Man page |
| fetch_results | Man page Source code |
| filter_fcHurdleTestResults | Man page |
| get_case_exceptions | Man page Source code |
| get_configuration | Man page |
| get_configuration,Result-method | Man page |
| get_configurations | Man page |
| get_configurations,Result-method | Man page |
| get_networks | Man page Source code |
| get_pathway | Man page |
| get_pathway,Configuration-method | Man page |
| get_pathways | Man page |
| get_pathways,Result-method | Man page |
| get_result_url | Man page Source code |
| get_results | Man page Source code |
| get_results_from_folder | Man page Source code |
| get_started | Man page Source code |
| get_status | Man page Source code |
| graph_kpm | Man page Source code |
| igraph_to_sif | Man page Source code |
| import_graph | Man page Source code |
| is_finished | Man page Source code |
| kpm | Man page Source code |
| kpm_options | Man page Source code |
| pathway_comparison_plots | Man page Source code |
| pathway_statistics | Man page Source code |
| profile_pathway | Man page Source code |
| quest_progress_url | Man page Source code |
| remove_configuration | Man page |
| reset_options | Man page Source code |
| retrieve_biogrid | Man page Source code |
| save_local_results | Man page Source code |
| save_remote_results | Man page Source code |
| sc_to_indicator_matrix | Man page Source code |
| set_avg_exp | Man page |
| set_avg_exp,Pathway-method | Man page |
| set_num_edges | Man page |
| set_num_edges,Pathway-method | Man page |
| set_num_nodes | Man page |
| set_num_nodes,Pathway-method | Man page |
| set_pathway | Man page |
| set_pathway,Result-method | Man page |
| setup_kpm | Man page Source code |
| sif_to_igraph | Man page Source code |
| submit_kpm | Man page Source code |
| test_jvm | Man page Source code |
| to_indicator_matrix | Man page Source code |
| to_java_arguments | Man page Source code |
| visualize_result | Man page Source code |
| withTryCatch | Man page Source code |
