kpm: Main method used for running KPM
In baumbachlab/keypathwayminer-R: KeyPathwayMiner R-Package
kpm R Documentation
Main method used for running KPM
Description
Runs KeyPathwayMiner localy via the standalone
or remotely via the RESTful API of the KeyPathwayMiner
website. Input parameters are indicator matrices and a graph_file.
You can view or change the run parameters through the
kpm_options() function.
Usage
kpm(indicator_matrices, graph = NULL)
Arguments
indicator_matrices
List of data frames.
graph
Path of the graph file or an igraph object.
NULL if you want to use a graph from the web service (only for remote runs).
Use get_networks()
to see all networks.
baumbachlab/keypathwayminer-R documentation built on June 29, 2023, 11:21 a.m.
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| kpm | R Documentation |
Main method used for running KPM
Description
Runs KeyPathwayMiner localy via the standalone or remotely via the RESTful API of the KeyPathwayMiner website. Input parameters are indicator matrices and a graph_file. You can view or change the run parameters through the kpm_options() function.
Usage
kpm(indicator_matrices, graph = NULL)
Arguments
indicator_matrices |
List of data frames. |
graph |
Path of the graph file or an igraph object. NULL if you want to use a graph from the web service (only for remote runs). Use get_networks() to see all networks. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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