expand_params_age: Expand parameter list to include age structure

In bbolker/McMasterPandemic: Pandemic Model

Expand parameter list to include age structure

Description

Expand parameter list to include age structure

Usage

expand_params_age(
  params,
  age_cat = mk_agecats(),
  beta0 = NULL,
  transmissibility = NULL,
  contact_rate_age = NULL,
  Nvec = NULL,
  pmat = NULL,
  balance_warning = TRUE
)

Arguments

params	parameter list (e.g. read in with 'read_params()')
age_cat	vector of age categories
beta0	vector of age-specific beta0 values (if NULL, assume same beta0 for all age groups as already provided in params)
transmissibility	proportion of contacts between S & I that lead to transmission
contact_rate_age	average overall contact rate by age
Nvec	population distribution (as counts); default is uniform
pmat	contact matrix; default is uniform
balance_warning	should a warning about the balance of contacts be provided?

See Also

Other classic_macpan: add_d_log(), add_updated_vaxrate(), aggregate_agecats(), calibrate_comb(), calibrate(), check_age_cat_compatibility(), check_contact_rate_setting(), col_multiply(), condense_age(), condense_params_vax(), condense_state(), condense_vax(), dev_is_tikz(), do_step(), expand_params_desc_age(), expand_params_desc_variant(), expand_params_desc_vax(), expand_params_mistry(), expand_params_variant(), expand_params_vax(), expand_state_age(), expand_state_vax(), expand_stateval_testing(), fix_pars(), fix_stored(), forecast_ensemble(), forecast_sim(), getData(), get_GI_moments(), get_Gbar(), get_R0(), get_doses_per_day(), get_evec(), get_kernel_moments(), get_opt_pars(), get_r(), invlink_trans(), make_betavec(), make_beta(), make_jac(), make_ratemat(), make_state(), make_test_wtsvec(), make_vaxrate(), mk_Nvec(), mk_agecats(), mk_contact_rate_setting(), mk_mistry_Nvec(), mk_pmat(), mk_vaxcats(), mle_fun(), non_expanded_states, rExp(), read_params(), repair_names_age(), restore(), run_sim_ageify(), run_sim_break(), run_sim_loglin(), run_sim_mobility(), run_sim_range(), run_sim(), show_ratemat(), testify(), texify(), trans_state_vars(), update_contact_rate_setting(), update_foi(), update_params_mistry(), vis_model(), write_params()

Examples

params <- read_params("PHAC_testify.csv")
params_age <- expand_params_age(params)

bbolker/McMasterPandemic documentation built on Aug. 25, 2024, 6:35 p.m.