Files in bbolker/fitsir
SIR fitting tools
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/data.R
R/fitsir-class.R
R/fitsir-methods.R
R/fitsir.R
R/grad.R
R/hessian.R
R/models.R
R/startfun.R
R/zzz.R
README.md
TODO.md
data/bombay.RData
data/harbin.RData
data/phila1918.RData
fitsir.Rproj
inst/NEWS.Rd
inst/doc/details.R
inst/doc/details.Rnw
inst/doc/details.pdf
inst/doc/fitsir.R
inst/doc/fitsir.Rnw
inst/doc/fitsir.pdf
man/Eval-loglik.fitsir-method.Rd
man/Eval.Rd
man/SIR.detsim.Rd
man/SIR.detsim.hessian.Rd
man/SIR.grad.Rd
man/SIR.hessian.Rd
man/SIR.logLik.Rd
man/SIR.sensitivity.Rd
man/Transform-loglik.fitsir-method.Rd
man/Transform.Rd
man/bombay.Rd
man/coef-fitsir-method.Rd
man/dispersion-fitsir-method.Rd
man/dispersion.Rd
man/fitsir-class.Rd
man/fitsir.Rd
man/grad-loglik.fitsir-method.Rd
man/grad.Rd
man/harbin.Rd
man/hessian-loglik.fitsir-method.Rd
man/hessian.Rd
man/initialize-loglik.fitsir-method.Rd
man/initialize_hessian.Rd
man/loglik.fitsir-class.Rd
man/mledsp.Rd
man/phila1918.Rd
man/plot-fitsir-missing-method.Rd
man/predict-fitsir-method.Rd
man/residuals-fitsir-method.Rd
man/select_model.Rd
man/show-summary.fitsir-method.Rd
man/smooth.spline2.Rd
man/startfun.Rd
man/summarize.pars.Rd
man/summary-fitsir-method.Rd
man/summary.fitsir-class.Rd
man/trans.pars.Rd
misc/Dietz_harbin_sm.csv
misc/Dietz_harbin_sm.png
misc/Hessian.html
misc/Hessian.rmd
misc/LHSsim_full.R
misc/LHSsim_full.html
misc/LHSsim_full.rda
misc/LHSsim_full.rmd
misc/LHSsim_pre.R
misc/LHSsim_pre.rda
misc/Makefile
misc/deBInfer.html
misc/deBInfer.rda
misc/deBInfer.rmd
misc/figures/LHSsim_full_figs.R
misc/figures/compare_dist.R
misc/figures/compare_dist.rda
misc/figures/compare_method.R
misc/figures/compare_method.rda
misc/figures/nll_steps.pdf
misc/figures/optimx.R
misc/figures/stochsim_data.R
misc/figures/stochsim_data_fix.rda
misc/figures/stochsim_data_lhs.rda
misc/fitLHS.R
misc/fitLHS.rda
misc/fitLHS2.rda
misc/fitLHS3.rda
misc/fitLHS4.rda
misc/fitLHS_explore.html
misc/fitLHS_explore.rda
misc/fitLHS_explore.rmd
misc/fitSIRdemo.html
misc/fitSIRdemo.rmd
misc/fitsir_ms.bib
misc/gani_leach_1ab.dat
misc/gani_leach_1ab.png
misc/gani_leach_1cd.png
misc/gani_leach_1ef.png
misc/ggviolin2.png
misc/harbin.Rnw
misc/harbin.pdf
misc/junk/fitsir-debinfer.R
misc/junk/gradcomp.R
misc/junk/gradcomp.Rnw
misc/junk/gradcomp.pdf
misc/junk/sirgrad.c
misc/junk/sirgrad.cpp
misc/likelihood.png
misc/ms.Rnw
misc/ms.html
misc/ms.pdf
misc/ms.rmd
misc/optimMethod.html
misc/optimMethod.rmd
misc/plague.bib
misc/rsif20060161supp1.xls
misc/stoch_autostart.html
misc/stoch_autostart.rmd
misc/stochsim.R
misc/stochsim.html
misc/stochsim.rda
misc/stochsim.rmd
misc/stochsim_4.rda
misc/stochsim_5.rda
misc/stochsim_batch1.R
misc/stochsim_funs.R
misc/stochsim_swp.R
misc/stochsim_swp.rda
misc/testgaus2.R
src/sirgrad.c
tests/testthat/test-NB.R
tests/testthat/test-basic.R
tests/testthat/test-convergence.R
tests/testthat/test-deriv.R
tests/testthat/test-hessian.R
vignettes/Dietz_harbin_sm.png
vignettes/Makefile
vignettes/details.Rnw
vignettes/fitsir.Rnw
vignettes/plague.bib
