Man pages for bbolker/fitsir
SIR fitting tools

bombay	Bombay data set
coef-fitsir-method	Extract parameter of a fit
dispersion	S4 method for finding a dispersion parameter
dispersion-fitsir-method	Find dispersion parameter
Eval	S4 generic for evaluate an object
Eval-loglik.fitsir-method	Evaluate log likelihood model
fitsir	fitting function
fitsir-class	Class "fitsir". Result of SIR model fitting based on Maximum...
grad	S4 generic for computing a gradient
grad-loglik.fitsir-method	Evaluate the gradient of a model
harbin	1912 Harbin plague data set
hessian	S4 generic for computing a hessian
hessian-loglik.fitsir-method	Evaluate the hessian of a model
initialize_hessian	initialize the hessian model
initialize-loglik.fitsir-method	the initializer for loglik.fitsir
loglik.fitsir-class	Class representing log-likelihood models used to fit the SIR...
mledsp	Maximum likelihood estimate of negative binomial dispersion...
phila1918	1918 Philadelphia flu data set
plot-fitsir-missing-method	Plot a fitsir object
predict-fitsir-method	Forecast from an SIR fit and find confidence interval
residuals-fitsir-method	Find residuals between the fit and the data
select_model	Select likelihood model
show-summary.fitsir-method	Show summary of a fit
SIR.detsim	deterministic trajectory of SIR
SIR.detsim.hessian	integrate second order sensitivities
SIR.grad	gradient function (solves with S,log(I) for stability)
SIR.hessian	find Hessian
SIR.logLik	Log-likelihood for SIR trajectory
SIR.sensitivity	Gradient of negative log likelihood with respect to each...
smooth.spline2	Fit a spline to an epidemic data
startfun	Starting function
summarize.pars	Summarize parameters
summary.fitsir-class	Class "summary.fitsir". Summary of SIR model fit
summary-fitsir-method	Summarize the fit
Transform	S4 generic for transforming an object
Transform-loglik.fitsir-method	Transform the model
trans.pars	transform parameters