clusterQualityGtN: Get the proportion of clusters over a specified quality...
In bcalder/savR: Parse and analyze Illumina SAV files
Description
Usage
Arguments
Examples
Description
Return the ratio of clusters with a quality score less than or equal to
a specified value (n) for the requested lanes and cycles.
Usage
1
2
3
4
5
clusterQualityGtN(project, lane, cycle, n)
## S4 method for signature 'savProject,integer,integer,integer'
clusterQualityGtN(project, lane,
cycle, n = 30L)
Arguments
project
SAV project
lane
lane(s) number
cycle
cycle(s) number
n
quality threshold
Examples
1
2
3
4
5
## Not run:
example(savR)
clusterQualityGtN(fc, 1L, 25L, 30L)
## End(Not run)
bcalder/savR documentation built on May 11, 2019, 10:24 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Examples
Description
Return the ratio of clusters with a quality score less than or equal to a specified value (n) for the requested lanes and cycles.
Usage
1 2 3 4 5 | clusterQualityGtN(project, lane, cycle, n)
## S4 method for signature 'savProject,integer,integer,integer'
clusterQualityGtN(project, lane,
cycle, n = 30L)
|
Arguments
project |
SAV project |
lane |
lane(s) number |
cycle |
cycle(s) number |
n |
quality threshold |
Examples
1 2 3 4 5 | ## Not run:
example(savR)
clusterQualityGtN(fc, 1L, 25L, 30L)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.