qualityHeatmap: Generate a heatmap of qualities

Description Usage Arguments

Description

Plots a heatmap of quality vs cycle for a given lane for 1 or more sequence reads. Read qualities include sequence + index.

Usage

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qualityHeatmap(project, lane, read, collapse)

## S4 method for signature 'savProject,integer,integer,logical'
qualityHeatmap(project, lane,
  read, collapse = T)

## S4 method for signature 'savProject,numeric,numeric,missing'
qualityHeatmap(project, lane,
  read)

Arguments

project

SAV project

lane

integer lane specification

read

integer vector of sequence reads to include (not including index reads)

collapse

whether or not to collapse index reads into the preceeding read (# reads = directions), default TRUE


bcalder/savR documentation built on June 4, 2017, 3:13 a.m.