plotIntensity: Plot flowcell intensity by base and cycle

In bcalder/savR: Parse and analyze Illumina SAV files

Description

Draws a representation of a flowcell, showing the average corrected called intensity values.

Usage

plotIntensity(project, cycle, base)

## S4 method for signature 'savProject,integer,character'
plotIntensity(project, cycle = 1L,
  base = c("A", "C", "G", "T"))

## S4 method for signature 'savProject,missing,missing'
plotIntensity(project)

## S4 method for signature 'savProject,integer,missing'
plotIntensity(project, cycle)

## S4 method for signature 'savProject,missing,character'
plotIntensity(project, base)

Arguments

project	A savProject-class object
cycle	integer cycle number
base	character for nucleotide

bcalder/savR documentation built on May 11, 2019, 10:24 p.m.