SAMC: Stochastic Approximation Monte Carlo (SAMC)

In bdsegal/fastperm: Fast approximation of small p-values in permutation tests by partitioning the permutation space

Description

This function implements the SAMC algorithm developed by Liang et al. (2007) and tailored to p-value estimation by Yu et al. (2011)

Usage

SAMC(x, y, testStat = ratioMean, B = 1e+05, m = 300, b0 = 1000)

Arguments

x	First sample
y	Second sample
testStat	Test statistic, defaults to the ratio of the means (ratioMean). Other choices are diffMean, ratioMedian, and diffMedian.
B	Total Number of Monte Carlo iterations. Defaults to 10e4.
m	Total number of regions in the SAMC algorithm. Note: SAMC regions are different than fastPerm partitions.
b0	Iteration at which the updates begin to decay.

Examples

x <- rexp(100, 5)
y <- rexp(100, 2)
sam <- SAMC(x, y)
sam

x <- rnorm(110, 0, 1)
y <- rnorm(110, 1, 1)
sam <- SAMC(x, y, testStat = diffMean)
sam
plot(sam)

bdsegal/fastperm documentation built on July 22, 2019, 1:26 p.m.