fastPermAlt: Fast approximation of small permutation p-values

In bdsegal/fastperm: Fast approximation of small p-values in permutation tests by partitioning the permutation space

Description

This function approximates the p-value (two-sided) for a two sample permutation test by partitioning the permutation space. This function is most useful for small p-values, e.g. p < 10^-6.

Usage

fastPermAlt(x, y, testStat = ratioMean, B = 1000, adjusted = FALSE)

Arguments

x	First sample
y	Second sample
testStat	Test statistic, defaults to the ratio of the means (ratioMean). The difference in means (diffMean) is also available.
B	Number of Monte Carlo iterations within each partition. Defaults to 1,000.

Examples

x <- rexp(100, 5)
y <- rexp(100, 2)
mStopRatioMean(x, y)
fastPermAlt(x, y)

x <- rnorm(110, 0, 1)
y <- rnorm(110, 1, 1)
mStopDiffMean(x, y)
fastPermAlt(x, y, testStat = diffMean)

bdsegal/fastperm documentation built on July 22, 2019, 1:26 p.m.