benchmark_causative: Benchmarking causative task

Description Usage Arguments Value

View source: R/benchmarks.R

Description

The benchmarking strategy leverages previously published ‘known’ relationships between medicalconcepts. We compare how similar the embeddings for a pair of concepts are by computing the cosine similarity of their corresponding vectors, and use this similarity to assess whether or not thetwo concepts are related. benchmark_causative assesses an embedding's ability to recover causes from the UMLS' table (MRREL) of entities known to be the cause of a certain result.

Usage

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benchmark_causative(embedding_df, sig_level = 0.05, bootstraps = 10000,
  verbose = TRUE)

Arguments

embedding_df

The embedding data frame with bound semantic type

sig_level

The significance level threshold

bootstraps

The number of boostraps to perform

verbose

Flag for verbosity

Value

Dataframe of scores on this task per causative relationship


beamandrew/cui2vec documentation built on Nov. 4, 2019, 7:07 a.m.