benchmark_ndf_rt: Benchmarking NDF RT task

Description Usage Arguments Value

View source: R/benchmarks.R

Description

The benchmarking strategy leverages previously published ‘known’ relationships between medicalconcepts. We compare how similar the embeddings for a pair of concepts are by computing the cosine similarity of their corresponding vectors, and use this similarity to assess whether or not thetwo concepts are related. benchmark_ndf_rt assesses an embedding's ability to power to detect "may treat" and "may prevent" relationships using bootstrap scores of random drug-disease pairs.

Usage

1
benchmark_ndf_rt(embedding_df, sig_level = 0.05, bootstraps = 10000)

Arguments

embedding_df

The embedding data frame with bound semantic type

sig_level

The significance level threshold

bootstraps

The number of bootstraps to perform

Value

Dataframe of performance on this task


beamandrew/cui2vec documentation built on Nov. 4, 2019, 7:07 a.m.