Description Usage Arguments Value
The benchmarking strategy leverages previously published ‘known’ relationships between medicalconcepts.
We compare how similar the embeddings for a pair of concepts are by computing the
cosine similarity of their corresponding vectors,
and use this similarity to assess whether or not thetwo concepts are related.
benchmark_ndf_rt
assesses an embedding's ability to power to detect "may treat" and "may prevent"
relationships using bootstrap scores of random drug-disease pairs.
1 | benchmark_ndf_rt(embedding_df, sig_level = 0.05, bootstraps = 10000)
|
embedding_df |
The embedding data frame with bound semantic type |
sig_level |
The significance level threshold |
bootstraps |
The number of bootstraps to perform |
Dataframe of performance on this task
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