benchmark_comorbidities: Benchmarking comorbidities task

Description Usage Arguments Value

View source: R/benchmarks.R

Description

The benchmarking strategy leverages previously published ‘known’ relationships between medicalconcepts. We compare how similar the embeddings for a pair of concepts are by computing the cosine similarity of their corresponding vectors, and use this similarity to assess whether or not thetwo concepts are related. benchmark_comorbidities focuses on an embedding's ability to identify comorbidities. A comorbidity is a disease or condition that frequently accompanies a primary diagnosis.

Usage

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benchmark_comorbidities(embedding_df, sig_level = 0.05,
  bootstraps = 10000)

Arguments

embedding_df

The embedding dataframe with bound semantic types

sig_level

The significance level threshold

bootstraps

The number of bootstraps to perform

Value

Dataframe of performance on this benchmark per disease


beamandrew/cui2vec documentation built on Nov. 4, 2019, 7:07 a.m.