Man pages for beauchamplab/rave
R Analysis and Visualization of 'ECOG/iEEG' Data

any_subject_loadedFunction to check if data repository has data
archive_subjectArchive Subject into Zipped file
arrange_data_dirInitialize data repository
arrange_modulesUpdate (optional), and check validity of modules
as_subjectMake new subject object from character
attachDefaultDataRepositoryAttach subject data
baselineBaseline signals
cache_raw_voltageImport Subject "Matlab" File and Create "HDF5" files
check_data_repoCheck if default data environment has object
check_dependenciesCheck and Install RAVE Dependencies
check_epochCheck if epoch file is valid
check_subjectComplete validity check a RAVE subject
check_subjects2check subject validity tools
check_subjects_oldcheck subject validity tools (use check_subjects2)
create_local_cacheCreate local cache to speed up loading speed
customizedUICustomized Shiny Elements
decimate_firDecimate or Down-sample a Signal using 'FIR' Filters
define_initializationDefines 'RAVE' Module Initialization Defines the global...
define_inputDefines 'RAVE' Module Inputs
define_outputDefine 'RAVE' Module Output
detect_modulesCheck all packages to for new RAVE module packages
diagnose_signalPlot and Inspect Signals in Trace, Periodogram, and Histogram
download_sample_dataFunction to download demo data to data repository
download_subject_dataFunction to download subjects from internet/local
ECoGRepositoryR6 class for 'iEEG/ECoG' data Repository
ElectrodeR6 Class for Electrode
electrode_localizationElectrode localization
eval_when_readyAdd Function to run once Module is Ready
ExecEnvirSession-based Module Runtime Environment Class
export_diagnose_voltageExport voltage (analog trace) diagnostic plots for each...
fake_sessionFake 'shiny' Session for Debug Purpose
finalize_installationFinalize installation
get_contentParse 'RAVE' Module Contents
getDefaultDataRepositoryGet environment where subject data is loaded
get_dirGet Directories in 'RAVE'
getExecEnvirFromContextGet Module Runtime Environment from Current Context
get_fake_updated_messageinternally used for debugging functions
get_mem_usageGet RAM usage
get_moduleFunction to find modules in packages
getModuleEnvirFromContextGet Module Instance from Current Context
get_pathSafe Way to Access Module Package Files Using Relative Path
get_rave_themeGet RAVE Theme from Package Settings
get_subjectsGet all subjects within project
get_valGet Value or Default
import_electrodesImport '.csv' files that contain electrode information
init_appInitialize main application for debugging purpose
init_moduleInitialize 'RAVE' module for debug purpose
lapply_async'lapply' using future package in asynchronous way
load_local_cacheLoad local cache for fast importing voltage, power, and phase
load_metaLoad subject meta data
load_modulesLoad RAVE Modules
load_rave_module_packageFunction to load RAVE module package with UI tools
load_scriptsLoad scripts that cannot put into package R folder
module_analysis_namesFind module analysis names
ModuleEnvirR6 'RAVE' Module Class
mount_demo_subjectLoad Demo Subject According to Package Configuration File
notch_channelFilter line noise out from ECoG channels
notch_filterApply Notch Filter to Analog Trace Data
plot_signalsPlot signals line by line
progressA wrapper for shiny Progress object
pwelchPlot "Welch" Periodogram
rave_brain2Tools to load and view brain in 3D viewer
rave-cacheCache R Objects with Different levels
rave_checksCheck if data is loaded for current module
rave_context'RAVE' Context: Read and Set Context of Environments
rave_context_genericsCreate S3 Generics that Respects 'RAVE' Context
rave_failureRAVE Failure Message
rave_ignoreFunctions for development use
rave_import_rawdataImport Raw Signal from Non-standard Formats
rave_module_toolsTools for module writers
rave_optionsFunction to change rave-options
rave_prepareLoad Subject and Create 'iEEG/ECoG' Data Environment
rave_preprocessRAVE Preprocess Function
rave_preprocess_toolsFunction to create RAVE preprocess tools
rave-tabsOpen/Close a tab in RAVE main application
rave_versionGet RAVE version
read_mgridMake 'iElvis' 'mgrid' file
reexportsObjects exported from other packages
reload_module_packageReload 'RAVE' module package without restarting 'RStudio'
r_to_py.SubjectConvert subject to python object
safe_write_csvSave data to "CSV", if file exists, rename old file
save_metaFunction to save meta data to subject
save_optionsFunction to locally save options (deprecated)
session-reactivesGet 'shiny' "input" and "output" objects under current...
set_rave_themeSet and Return RAVE theme
shinirizeConvert module to objects used in shiny
start_raveStart RAVE main application
start_yaelStart 'YAEL' electrode localization
SubjectR6 Class for 'RAVE' Subject
subject_tmpfileCreate temp file in subject module folder
suma_spec_parseParse 'SUMA' 'spec' file
suma_surface_volume_parseParse 'AFNI' 'BRIK/HEAD' file
to_moduleParse 'RAVE' Module and Returns Parsed Content in...
view_layoutDebug-use only, reload package, mount demo subject, and...
waveletWavelet Transformation With Phase
wavelet_kernelsReturns wavelets to be used for wavelet function
beauchamplab/rave documentation built on Feb. 23, 2024, 7:20 a.m.