Files in beauchamplab/rave

R Analysis and Visualization of 'ECOG/iEEG' Data

.Rbuildignore

.github/.gitignore

.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.gitignore

DESCRIPTION

DEVREPO

Installation.md

NAMESPACE

R/aaa.R R/checks.R R/checks2.R R/class-ECoGRepository.R R/class-Electrode.R R/class-ExecEnvir.R R/class-ModuleEnvir.R R/class-RaveFinalizer.R R/class-RaveHistory.R R/class-RawSubject.R R/class-Subject.R R/core-baseline.R R/core-brain_model.R R/core-data_repo.R R/core-file_structure.R R/core-localization.R R/core-module_tools.R R/core-modules.R R/core-options.R R/core-preprocess.R R/core-shinirize.R R/export-plots.R R/generics-core.R R/generics-default.R R/generics-define_initialization.R R/generics-define_input.R R/generics-define_output.R R/generics-eval_when_ready.R R/generics-input.R R/generics-load_scripts.R R/generics-output.R R/generics-shiny.R R/import-pryr.R R/io-afnisuma.R R/io-csv.R R/io-matlab.R R/io-misc.R R/io-subject.R R/legacy-cls_module.R R/legacy-func_rave_prepare.R R/legacy-pre_localization.R R/legacy-pre_localization_ct.R R/module-conf.R R/module-misc.R R/module-parse.R R/module-viewdebug.R R/rstudio-template.R R/shinyModule-preprocess-epoch.R R/shinyModule-preprocess-localization.R R/shinyModule-preprocess-notch.R R/shinyModule-preprocess-overview.R R/shinyModule-preprocess-wavelet.R R/shinyUI-data_selector.R R/shinyUI-debug_app.R R/shinyUI-main_app.R R/shinyUI-preprocess.R R/shinyUI-rave_options.R R/signal-decimate.R R/signal-misc.R R/signal-notch.R R/signal-plots.R R/signal-pwelch.R R/signal-wavelet.R R/utils-cache.R R/utils-misc.R R/utils-parallel.R R/utils-print.R R/utils-progress.R R/utils-rstudio.R R/utils-shiny.R R/utils-shinydashboard.R R/zzz.R README.md Requirements.md Updates.md

_pkgdown.yml

alternative_installation.md api/brain_rendering.R api/data_loading.R api/template_brain_mapping.R

docker/Dockerfile

docker/addraveuser.sh

docker/extractraveinit.R docker/install_rpkg_alt.R

inst/.gitignore

inst/CITATION

inst/WORDLIST

inst/assets/dipterix.css

inst/assets/dipterix.js

inst/assets/dipterix_inputs.js

inst/assets/images/cover.gif

inst/assets/images/data_selectior_epoch.gif

inst/assets/images/favicon.ico

inst/assets/images/logo-md.jpg

inst/assets/images/logo-sm.jpg

inst/assets/input_compound.js

inst/default_module.R

inst/hdf5_installer.sh

inst/markdowns/Installation_questions.md

inst/module_addons/aaa.R

inst/module_addons/compile.R inst/module_addons/local.R

inst/packages.txt

inst/palettes.yaml

inst/rstudio/templates/project/create_template.dcf

inst/settings.yaml

inst/template/.gitignore

inst/template/DESCRIPTION

inst/template/NAMESPACE

inst/template/R/aaa.R inst/template/R/outputs.R inst/template/R/utils.R inst/template/inst/modules/first_example/comp.R inst/template/inst/modules/first_example/main.R

inst/template/inst/palettes.yaml

inst/template/inst/rave.yaml

inst/template/inst/tools/input_widgets.R inst/template/inst/tools/output_widgets.R inst/third_party/AFNIio.R

inst/third_party/NWB/core/nwb.base.yaml

inst/third_party/NWB/core/nwb.behavior.yaml

inst/third_party/NWB/core/nwb.ecephys.yaml

inst/third_party/NWB/core/nwb.epoch.yaml

inst/third_party/NWB/core/nwb.file.yaml

inst/third_party/NWB/core/nwb.icephys.yaml

inst/third_party/NWB/core/nwb.image.yaml

inst/third_party/NWB/core/nwb.misc.yaml

inst/third_party/NWB/core/nwb.namespace.yaml

inst/third_party/NWB/core/nwb.ogen.yaml

inst/third_party/NWB/core/nwb.ophys.yaml

inst/third_party/NWB/core/nwb.retinotopy.yaml

inst/third_party/NWB/ecog/ecog.extensions.yaml

inst/third_party/NWB/ecog/ecog.namespace.yaml

inst/third_party/NWB/nwb_cls.R inst/third_party/NWB/nwb_import.R inst/third_party/NWB/nwb_parser.R

inst/third_party/RAVEPy/__init__.py

inst/third_party/RAVEPy/__pycache__/__init__.cpython-37.pyc

inst/third_party/RAVEPy/rave_io.py

inst/third_party/RAVEPy/rave_subject.py

inst/third_party/RAVEPy/trans_wavelet.py

inst/third_party/RAVEPy/transforms.py

inst/utils/migrate_subject.R inst/utils/preprocessing_no_gui.R man/ECoGRepository.Rd man/Electrode.Rd man/ExecEnvir.Rd man/ModuleEnvir.Rd man/Subject.Rd man/any_subject_loaded.Rd man/archive_subject.Rd man/arrange_data_dir.Rd man/arrange_modules.Rd man/as_subject.Rd man/attachDefaultDataRepository.Rd man/baseline.Rd man/cache_raw_voltage.Rd man/check_data_repo.Rd man/check_dependencies.Rd man/check_epoch.Rd man/check_subject.Rd man/check_subjects2.Rd man/check_subjects_old.Rd man/create_local_cache.Rd man/customizedUI.Rd man/decimate_fir.Rd man/define_initialization.Rd man/define_input.Rd man/define_output.Rd man/detect_modules.Rd man/diagnose_signal.Rd man/download_sample_data.Rd man/download_subject_data.Rd man/electrode_localization.Rd man/eval_when_ready.Rd man/export_diagnose_voltage.Rd man/fake_session.Rd man/finalize_installation.Rd man/getDefaultDataRepository.Rd man/getExecEnvirFromContext.Rd man/getModuleEnvirFromContext.Rd man/get_content.Rd man/get_dir.Rd man/get_fake_updated_message.Rd man/get_mem_usage.Rd man/get_module.Rd man/get_path.Rd man/get_rave_theme.Rd man/get_subjects.Rd man/get_val.Rd man/import_electrodes.Rd man/init_app.Rd man/init_module.Rd man/lapply_async.Rd man/load_local_cache.Rd man/load_meta.Rd man/load_modules.Rd man/load_rave_module_package.Rd man/load_scripts.Rd man/module_analysis_names.Rd man/mount_demo_subject.Rd man/notch_channel.Rd man/notch_filter.Rd man/plot_signals.Rd man/progress.Rd man/pwelch.Rd man/r_to_py.Subject.Rd man/rave-cache.Rd man/rave-tabs.Rd man/rave_brain2.Rd man/rave_checks.Rd man/rave_context.Rd man/rave_context_generics.Rd man/rave_failure.Rd man/rave_ignore.Rd man/rave_import_rawdata.Rd man/rave_module_tools.Rd man/rave_options.Rd man/rave_prepare.Rd man/rave_preprocess.Rd man/rave_preprocess_tools.Rd man/rave_version.Rd man/read_mgrid.Rd man/reexports.Rd man/reload_module_package.Rd man/safe_write_csv.Rd man/save_meta.Rd man/save_options.Rd man/session-reactives.Rd man/set_rave_theme.Rd man/shinirize.Rd man/start_rave.Rd man/start_yael.Rd man/subject_tmpfile.Rd man/suma_spec_parse.Rd man/suma_surface_volume_parse.Rd man/to_module.Rd man/view_layout.Rd man/wavelet.Rd man/wavelet_kernels.Rd

rave.Rproj

tests/spelling.R tests/testthat.R tests/testthat/test.aaa.R tests/testthat/test.checks.R tests/testthat/test.moduledev.R tests/testthat/test.preprocess.R tests/testthat/test.subjectLoad.R tests/testthat/test.tensor.R

travis_setup.sh

uninstall.R

beauchamplab/rave documentation built on Feb. 23, 2024, 7:20 a.m.