dgeWithLimmaVoom: Perform differential gene expression analysis with...

In bedapub/ribiosNGS: Utilities for next-generation sequencing data analysis in ribios

Perform differential gene expression analysis with edgeR-limma

Description

Perform differential gene expression analysis with edgeR-limma

Usage

dgeWithLimmaVoom(edgeObj, ...)

Arguments

edgeObj	An object of EdgeObject
...	Passed to voom The function performs end-to-end differential gene expression (DGE) analysis with common best practice using voom-limma

Value

An EdgeResult object

Examples

set.seed(1887)
exObj <- exampleEdgeObject()
exLimmaVoomRes <- dgeWithLimmaVoom(exObj)
dgeTable(exLimmaVoomRes)

## compare with edgeR
dgeTable(dgeWithEdgeR(exObj))

## LimmaVoomResult can be also used with exportEdgeResult
exportEdgeResult(exLimmaVoomRes, tempdir(), "overwrite")

bedapub/ribiosNGS documentation built on Feb. 10, 2025, 12:34 a.m.