eset2DGEList: Transform an EexpressionSet to a DGEList object

In bedapub/ribiosNGS: Utilities for next-generation sequencing data analysis in ribios

Transform an EexpressionSet to a DGEList object

Description

Transform an EexpressionSet to a DGEList object

Usage

eset2DGEList(eset, groupVar = "group")

Arguments

eset	An ExpressionSet object
groupVar	Character string, column in phenoDatta

Value

A DGEList object

Examples

eset <- new("ExpressionSet",
  exprs=matrix(rpois(120, 20), nrow=20,
               dimnames=list(LETTERS[1:20], letters[1:6])),
  phenoData = new("AnnotatedDataFrame", data.frame(Sample=letters[1:6],
                  group=gl(2, 3), row.names=letters[1:6])),
  featureData = new("AnnotatedDataFrame", data.frame(Feature=LETTERS[1:20],
                  row.names=LETTERS[1:20])))
eset2DGEList(eset)

bedapub/ribiosNGS documentation built on Feb. 10, 2025, 12:34 a.m.